Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
STAD rs2336595 chr1:197000476 T/C 1.25E-7 406 5.8 17.05 14.2 KM Plot
STAD rs2373524 chr7:148967553 C/A 4.41E-5 406 14.2 16.38 3.43 KM Plot
STAD rs2467578 chr17:72893737 C/T 1.39E-5 406 6.27 21.25 14.2 KM Plot
STAD rs2467579 chr17:72893673 A/G 9.57E-6 404 6.27 19.6 14.22 KM Plot
STAD rs2467580 chr17:72893665 A/G 9.57E-6 404 6.27 19.6 14.22 KM Plot
STAD rs2486758 chr10:104597480 A/G 2.13E-5 406 15.8 13.17 9.7 KM Plot
STAD rs2539918 chr22:20994186 C/T 8.96E-14 406 14.37 12.93 3.53 KM Plot
STAD rs2544399 chr4:106690356 A/G 5.14E-5 404 5.83 13.23 14.55 KM Plot
STAD rs2544401 chr4:106688976 T/C 5.14E-5 404 5.83 13.23 14.55 KM Plot
STAD rs2544424 chr4:106718316 A/C 4.4E-5 406 14.67 13.2 5.83 KM Plot
STAD rs2544429 chr4:106713998 G/T 4.36E-5 403 5.83 13.23 14.63 KM Plot
STAD rs2553470 chr4:106713673 G/A 4.36E-5 403 5.83 13.23 14.63 KM Plot
STAD rs2638079 chr17:72894109 C/T 1.39E-5 405 6.27 21.17 14.2 KM Plot
STAD rs2638080 chr17:72894234 G/A 1.39E-5 405 6.27 21.17 14.2 KM Plot
STAD rs2683268 chr17:72894190 T/A 1.34E-5 404 6.27 20.38 14.2 KM Plot